• Skip navigation
  • Skip to navigation
  • Skip to the bottom
Simulate organization breadcrumb open Simulate organization breadcrumb close
Department of Chemistry and Pharmacy
  • FAUTo the central FAU website
  1. Friedrich-Alexander-Universität
  2. Naturwissenschaftliche Fakultät
  3. Department Chemie und Pharmazie
Suche öffnen
  • de
  • en
  • Campo
  • StudOn
  • FAUdir
  • Jobs
  • Map
  • Help
  1. Friedrich-Alexander-Universität
  2. Naturwissenschaftliche Fakultät
  3. Department Chemie und Pharmazie

Department of Chemistry and Pharmacy

Navigation Navigation close
  • Department
    • Administrative Office
    • Boards
    • Sections
    • Centers
    Portal Department
  • Research
    • Sections
    • Research areas
    • Research groups
    • Young investigators
    Portal Research
  • Study
    • Chemistry / Molecular Science
    • Pharmacy
    • Food Chemistry
    • PhD studies
    Portal Study
  • Events
  1. Home
  2. Computer Chemistry Center
  3. People and Groups
  4. Dr. Frank Beierlein
  5. Publications

Publications

In page navigation: Computer Chemistry Center
  • People and Groups
    • Prof. Dr. Petra Imhof
    • Prof. Dr. Tim Clark
    • Prof. Dr. Bernd Meyer
    • Prof. Dr. Carolin Müller
    • Prof. Dr. David Smith
    • Prof. Dr. Dirk Zahn
    • PD Dr. Harald Lanig
    • Dr. rer. nat. habil. Tatyana Shubina
    • Dr. Thilo Bauer
    • Dr. Frank Beierlein
      • Publications
      • Research
      • Teaching
    • Dr. Nico van Eikema Hommes
  • Research
  • Conferences
  • Journals
  • Internal

Publications

Dr. Frank Beierlein: Publications, Talks and Posters

 

  • Michael Raucheisen, Dina Attia, Marlies Körber, Alejandra Aroca Crevillén, Andrés Hidalgo, Frank Beierlein, Petra Imhof, Andriy Mokhir
    Mitochondria-Catalyzed Activation of Anticancer Prodrugs
    ChemCatChem 2025, accepted. (DOI: 10.1002/cctc.202500054)

 

Publications from FAU Current Research Information System (CRIS)

2024

  • Amador Balderas JA., Beierlein F., Horn A., Volkenandt S., Völcker L., Mokhtari N., Epee Ndongue JC., Imhof P.:
    Mode of Metal Ligation Governs Inhibition of Carboxypeptidase A
    In: International Journal of Molecular Sciences 25 (2024), p. 13725
    ISSN: 1422-0067
    DOI: 10.3390/ijms252413725
  • Beierlein F., Horn A., Sticht H., Mokhir A., Imhof P.:
    In Silico Study of Camptothecin-Based Pro-Drugs Binding to Human Carboxylesterase 2
    In: Biomolecules 14 (2024), Article No.: 153
    ISSN: 2218-273X
    DOI: 10.3390/biom14020153
  • Handke M., Beierlein F., Imhof P., Schiedel M., Hammann S.:
    New fluorogenic triacylglycerols as sensors for dynamic measurement of lipid oxidation
    In: Analytical and Bioanalytical Chemistry (2024)
    ISSN: 1618-2642
    DOI: 10.1007/s00216-024-05642-w
  • Klemt I., Reshetnikov V., Dutta S., Bila G., Bilyy R., Cuartero IC., Hidalgo A., Wünsche A., Böhm M., Wondrak M., Kunz-Schughart LA., Tietze R., Beierlein F., Imhof P., Gensberger-Reigl S., Pischetsrieder M., Körber M., Jost T., Mokhir A.:
    A concept of dual-responsive prodrugs based on oligomerization-controlled reactivity of ester groups: an improvement of cancer cells versus neutrophils selectivity of camptothecin
    In: RSC Medicinal Chemistry (2024)
    ISSN: 2632-8682
    DOI: 10.1039/d3md00609c

2022

  • Beierlein F., Volkenandt S., Imhof P.:
    Oxidation Enhances Binding of Extrahelical 5-Methyl-Cytosines by Thymine DNA Glycosylase
    In: Journal of Physical Chemistry B 126 (2022), p. 1188-1201
    ISSN: 1520-6106
    DOI: 10.1021/acs.jpcb.1c09896

2021

  • Volkenandt S., Beierlein F., Imhof P.:
    Interaction of thymine dna glycosylase with oxidised 5-methyl-cytosines in their amino-and imino-forms
    In: Molecules 26 (2021), Article No.: 5728
    ISSN: 1420-3049
    DOI: 10.3390/molecules26195728

2020

  • Eberlein L., Beierlein F., van Eikema Hommes N., Radadiya A., Heil J., Benner SA., Clark T., Kast SM., Richards NG.:
    Tautomeric Equilibria of Nucleobases in the Hachimoji Expanded Genetic Alphabet
    In: Journal of Chemical Theory and Computation 16 (2020), p. 2766-2777
    ISSN: 1549-9618
    DOI: 10.1021/acs.jctc.9b01079
  • Hardwick JS., Haugland MM., El-Sagheer AH., Ptchelkine D., Beierlein F., Lane AN., Brown T., Lovett JE., Anderson EA.:
    2'-Alkynyl spin-labelling is a minimally perturbing tool for DNA structural analysis
    In: Nucleic Acids Research 48 (2020), p. 2830-2840
    ISSN: 0305-1048
    DOI: 10.1093/nar/gkaa086

2019

  • Chercheja S., Daum S., Xu H., Beierlein F., Mokhir A.:
    Hybrids of a 9-anthracenyl moiety and fluorescein as chemodosimeters for the detection of singlet oxygen in live cells
    In: Organic & Biomolecular Chemistry 17 (2019), p. 9883-9891
    ISSN: 1477-0520
    DOI: 10.1039/c9ob02070e
  • Daum S., Toms J., Reshetnikov V., Özkan H., Hampel F., Maschauer S., Hakimioun AH., Beierlein F., Sellner L., Schmitt M., Prante O., Mokhir A.:
    Identification of Boronic Acid Derivatives as an Active Form of N-Alkylaminoferrocene-Based Anticancer Prodrugs and Their Radiolabeling with 18F
    In: Bioconjugate Chemistry 30 (2019), p. 1077-1086
    ISSN: 1043-1802
    DOI: 10.1021/acs.bioconjchem.9b00019
  • Kriebel M., Hennemann M., Beierlein F., Medina DD., Bein T., Clark T.:
    Propagation of Holes and Electrons in Metal-Organic Frameworks
    In: Journal of Chemical Information and Modeling (2019)
    ISSN: 1549-9596
    DOI: 10.1021/acs.jcim.9b00461
  • Zozulia O., Bachmann T., Deussner-Helfmann NS., Beierlein F., Heilemann M., Mokhir A.:
    Red light-triggered nucleic acid-templated reaction based on cyclic oligonucleotide substrates
    In: Chemical Communications 55 (2019), p. 10713-10716
    ISSN: 1359-7345
    DOI: 10.1039/c9cc03587g

2016

  • Beierlein F., Paradas Palomo M., Sharapa D., Zozulia O., Mokhir A., Clark T.:
    DNA-Dye-Conjugates: Conformations and Spectra of Fluorescence Probes
    In: Plos One 11 (2016), p. e0160229
    DOI: 10.1371/journal.pone.0160229

2015

  • Beierlein F., Clark T., Braunschweig B., Engelhardt K., Glas L., Peukert W.:
    Carboxylate Ion Pairing with Alkali-Metal Ions for β-Lactoglobulin and Its Role on Aggregation and Interfacial Adsorption
    In: Journal of Physical Chemistry B 119 (2015), p. 5505-5517
    ISSN: 1520-6106
    DOI: 10.1021/acs.jpcb.5b01944

2013

  • Beierlein F., Krause A., Jäger C., Fita P., Vauthey E., Clark T.:
    Molecular Dynamics Simulations of Liquid Phase Interfaces: Understanding the Structure of the Glycerol/Water–Dodecane System
    In: Langmuir 29 (2013), p. 11898--11907
    ISSN: 0743-7463
    DOI: 10.1021/la4021355

2012

  • Ozpinar GA., Beierlein F., Peukert W., Zahn D., Clark T.:
    A test of improved force field parameters for urea: molecular-dynamics simulations of urea crystals
    In: Journal of Molecular Modeling 18 (2012), p. 3455--3466
    ISSN: 0948-5023
    DOI: 10.1007/s00894-011-1336-5

2011

  • Beierlein F., Kneale GG., Clark T.:
    Predicting the Effects of Basepair Mutations in DNA-Protein Complexes by Thermodynamic Integration
    In: Biophysical Journal 101 (2011), p. 1130--1138
    ISSN: 0006-3495
    DOI: 10.1016/j.bpj.2011.07.003
  • Beierlein F., Michel J., Essex J.:
    A Simple QM/MM Approach for Capturing Polarization Effects in Protein-Ligand Binding Free Energy Calculations
    In: Journal of Physical Chemistry B 115 (2011), p. 4911-4926
    ISSN: 1520-6106
    DOI: 10.1021/jp109054j

2007

  • Seidel U., Othersen O., Lanig H., Beierlein F., Clark T.:
    Molecular Dynamics Characterization of the Structures and Induction Mechanisms of a Reverse Phenotype of the Tetracycline Receptor
    In: Journal of Physical Chemistry B 111 (2007), p. 6006-6014
    ISSN: 1520-6106
    DOI: 10.1021/jp0674468

2006

  • Beierlein F., Othersen O., Lanig H., Schneider S., Clark T.:
    Simulating FRET from tryptophan: Is the rotamer model correct?
    In: Journal of the American Chemical Society 128 (2006), p. 5142-5152
    ISSN: 0002-7863
    DOI: 10.1021/ja058414l
  • Lanig H., Othersen O., Beierlein F., Seidel U., Clark T.:
    Molecular dynamics simulations of the tetracycline-repressor protein: The mechanism of induction
    In: Journal of Molecular Biology 359 (2006), p. 1125-1136
    ISSN: 0022-2836
    DOI: 10.1016/j.jmb.2006.04.014
  • Lanig H., Othersen O., Seidel U., Beierlein F., Exner T., Clark T.:
    Structural changes and binding characteristics of the tetracycline-repressor binding site on induction
    In: Journal of Medicinal Chemistry 49 (2006), p. 3444-3447
    ISSN: 0022-2623
    DOI: 10.1021/jm060289g

2004

  • Beierlein F., Clark T.:
    Computer simulations of enzyme reaction mechanisms: Simulation of protein spectra
    2004
    DOI: 10.1007/3-540-26657-7_22
  • Beierlein F., Lanig H., Othersen O., Schneider S., Clark T.:
    MD/CI-approach simulating FRET in proteins.
    In: ACS National Meeting Book of Abstracts 227 (2004), p. U1025-U1025
    ISSN: 0065-7727
    (anderer)
  • Horn A., Beierlein F., Lanig H., Schürer G., Clark T.:
    Quantum mechanical/molecular mechanical (QM/MM) docking: A new protocol and its evaluation for known test systems.
    In: ACS National Meeting Book of Abstracts 227 (2004), p. U1025-U1025
    ISSN: 0065-7727
    (Zeitungsartikel)

2003

  • Beierlein F., Lanig H., Schürer G., Horn A., Clark T.:
    Quantum mechanical/molecular mechanical (QM/MM) docking: an evaluation for known test systems
    In: Molecular Physics 101 (2003), p. 2469-2480
    ISSN: 0026-8976
    DOI: 10.1080/0026897031000092940
  • Othersen O., Beierlein F., Lanig H., Clark T.:
    Conformations and tautomers of tetracycline
    In: Journal of Physical Chemistry B 107 (2003), p. 13743-13749
    ISSN: 1520-6106
    DOI: 10.1021/jp0364506

 

Publications – Complete List

  • Frank Beierlein, Harald Lanig, Gudrun Schürer, Anselm H. C. Horn and Timothy Clark
    Quantum Mechanical/Molecular Mechanical (QM/MM) Docking: An Evaluation for Known Test Systems
    Mol. Phys. 2003, 101, 2469-2480. (DOI: 10.1080/0026897031000092940)
  • Olaf G. Othersen, Frank Beierlein, Harald Lanig and Timothy Clark
    Conformations and Tautomers of Tetracycline
    J. Phys. Chem. B 2003, 107, 13743-13749. (DOI: 10.1021/jp0364506)
  • Frank Beierlein and Timothy Clark
    Computer Simulations of Enzyme Reaction Mechanisms: Simulation of Protein Spectra
    in High Performance Computing in Science and Engineering, Munich 2004 – Transactions of the Second Joint HLRB and KONWIHR Status and Result Workshop, March 2-3, 2004, Technical University of Munich and Leibnitz-Rechenzentrum Munich, Germany (Eds.: S. Wagner, W. Hanke, A. Bode, F. Durst)
    Springer-Verlag, Berlin, Heidelberg, New York, 2004, pp. 245-260.
  • Frank Beierlein
    QM/MM Docking and Simulations of FRET
    PhD thesis, Universität Erlangen-Nürnberg, Erlangen, 2005.
  • Frank R. Beierlein, Olaf G. Othersen, Harald Lanig, Siegfried Schneider and Timothy Clark
    Simulating FRET from Tryptophan: Is the Rotamer Model Correct?
    J. Am. Chem. Soc. 2006, 128, 5142-5152. (DOI: 10.1021/ja058414l)
  • Harald Lanig, Olaf G. Othersen, Frank R. Beierlein, Ute Seidel and Timothy Clark
    Molecular Dynamics Simulations of the Tetracycline-Repressor Protein: The Mechanism of Induction
    J. Mol. Biol. 2006, 359, 1125–1136. (DOI: 10.1016/j.jmb.2006.04.014)
  • Harald Lanig, Olaf G. Othersen, Ute Seidel, Frank R. Beierlein, Thomas Exner and Timothy Clark
    Structural Changes and Binding Characteristics of the Tetracycline-Repressor Binding Site on Induction
    J. Med. Chem. 2006, 49, 3444-3447. (DOI: 10.1021/jm060289g)
  • Ute Seidel, Olaf G. Othersen, Harald Lanig, Frank R. Beierlein and Timothy Clark
    Molecular Dynamics Characterization of the Structures and Induction Mechanisms of a Reverse Phenotype of the Tetracycline Receptor
    J. Phys. Chem. B 2007, 111, 6006-6014. (DOI: 10.1021/jp0674468)
  • Frank R. Beierlein, Julien Michel and Jonathan W. Essex
    A Simple QM/MM Approach for Capturing Polarization Effects in Protein-Ligand Binding Free Energy Calculations
    J. Phys. Chem. B 2011, 115, 4911-4926. (DOI: 10.1021/jp109054j)
  • Frank R. Beierlein, G. Geoff Kneale and Timothy Clark
    Predicting the Effects of Basepair Mutations in DNA-Protein Complexes by Thermodynamic Integration
    Biophys. J. 2011, 101, 1130-1138. (DOI: 10.1016/j.bpj.2011.07.003)
  • Gül Altınbaş Özpınar, Frank R. Beierlein, Wolfgang Peukert, Dirk Zahn and Timothy Clark
    (Gül Altınbaş Özpınar and Frank R. Beierlein contributed equally to this work)
    A Test of Improved Force Field Parameters for Urea: Molecular-Dynamics Simulations of Urea Crystals
    J. Mol. Model. 2012, 18, 3455-3466. (DOI: 10.1007/s00894-011-1336-5)
  • Frank R. Beierlein, Andreas M. Krause, Christof M. Jäger, Piotr Fita, Eric Vauthey and Timothy Clark
    Molecular Dynamics Simulations of Liquid Phase Interfaces: Understanding the Structure of the Glycerol/Water-Dodecane System
    Langmuir 2013, 29, 11898-11907. (DOI: 10.1021/la4021355)
  • Frank R. Beierlein, Timothy Clark, Björn Braunschweig, Kathrin Engelhardt, Lena Glas and Wolfgang Peukert
    Carboxylate Ion-Pairing with Alkali-Metal Ions for Beta-Lactoglobulin and Its Role on Aggregation and Interfacial Adsorption
    J. Phys. Chem. B 2015, 119, 5505-5517. (DOI: 10.1021/acs.jpcb.5b01944)
  • Frank R. Beierlein,* Miguel Paradas Palomo, Dmitry I. Sharapa, Oleksii Zozulia, Andriy Mokhir and Timothy Clark
    DNA-Dye-Conjugates: Conformations and Spectra of Fluorescence Probes
    PLoS ONE 2016, 11(7), e0160229. (DOI: 10.1371/journal.pone.0160229)
  • S. Daum, J. Toms, V. Reshetnikov, H. G. Özkan, F. Hampel, S. Maschauer, A. Hakimioun, F. Beierlein, L. Sellner, M. Schmitt, O. Prante, A. Mokhir
    Identification of Boronic Acid Derivatives as an Active Form of N-Alkylaminoferrocene-Based Anticancer Prodrugs and Their Radiolabeling with 18F
    Bioconjugate Chem. 2019, 30, 1077-1086. (DOI: 10.1021/acs.bioconjchem.9b00019)
  • O. Zozulia, T. Bachmann, N. Deussner-Helfmann, F. Beierlein, M. Heilemann, A. Mokhir
    Red light-triggered nucleic acid-templated reaction based on cyclic oligonucleotide substrates
    Chem. Commun. 2019, 55, 10713-10716. (DOI: 10.1039/C9CC03587G)
  • S. Chercheja, S. Daum, H.-G. Xu, F. R. Beierlein, A. Mokhir
    Hybrids of a 9-anthracenyl moiety and fluorescein as chemodosimeters for detection of singlet oxygen in live cells
    Org. Biomol. Chem. 2019, 17, 9883-9891. (DOI: 10.1039/C9OB02070E).
  • M. Kriebel, M. Hennemann, F. R. Beierlein, D. D. Medina, T. Bein, T. Clark
    Propagation of Holes and Electrons in Metal-Organic Frameworks
    J. Chem. Inf. Model. 2019, 59, 5057-5064. (DOI: 10.1021/acs.jcim.9b00461)
  • J. S. Hardwick, M. M. Haugland, A. H. El-Sagheer, D. Ptchelkine, F. R. Beierlein, A. N. Lane, T. Brown, J. E. Lovett, E. A. Anderson
    2′-Alkynyl spin-labelling is a minimally perturbing tool for DNA structural analysis
    Nucleic Acids Res. 2020, 48, 2830-2840. (DOI: 10.1093/nar/gkaa086)
  • L. Eberlein, F. R. Beierlein, N. J. R. van Eikema Hommes, A. Radadiya, J. Heil, S. A. Benner, T. Clark, S. M. Kast, N. G. J. Richards
    Tautomeric Equilibria of Nucleobases in the Hachimoji Expanded Genetic Alphabet
    J. Chem. Theory Comput. 2020, 16, 2766-2777. (DOI: 10.1021/acs.jctc.9b01079)
  • S. Volkenandt, F. Beierlein, P. Imhof
    (S. Volkenandt and F. Beierlein contributed equally)
    Interaction of Thymine DNA Glycosylase with Oxidised 5-Methyl-Cytosines in their Amino- and Imino-Forms
    Molecules 2021, 26, 5728. (DOI: 10.3390/molecules26195728)
  • Frank Beierlein, Senta Volkenandt, Petra Imhof
    Oxidation Enhances Binding of Extra-Helical 5-Methyl-Cytosines by Thymine DNA Glycosylase
    J. Phys. Chem. B 2022, 126, 6, 1188-1201. (DOI: 10.1021/acs.jpcb.1c09896)
  • I. Klemt, V. Reshetnikov, S. Dutta, G. Bila, R. Bilyy, I. C. Cuartero, A. Hidalgo, A. Wünsche, M. Böhm, M. Wondrak, L. A. Kunz-Schughart, R. Tietze, F. Beierlein, P. Imhof, S. Gensberger-Reigl, M. Pischetsrieder, M. Körber, T. Jost, A. Mokhir
    A concept of dual-responsive prodrugs based on oligomerization-controlled reactivity of ester groups: an improvement of cancer cells versus neutrophils selectivity of camptothecin
    RSC Med. Chem. 2024, 15, 1189-1197. (DOI: 10.1039/D3MD00609C)
  • Frank Beierlein, Anselm H. C. Horn, Heinrich Sticht, Andriy Mokhir, Petra Imhof
    In Silico Study of Binding of Camptothecin-Based Pro-Drugs to Human Carboxylesterase 2
    Biomolecules 2024, 14, 153. (DOI: 10.3390/biom14020153)
  • Maria Handke, Frank Beierlein, Petra Imhof, Matthias Schiedel, Simon Hammann
    New fluorogenic triacylglycerols as sensors for dynamic measurement of lipid oxidation
    Anal. Bioanal. Chem. 2024. (DOI: 10.1007/s00216-024-05642-w)
  • Jorge Antonio Amador Balderas, Frank Beierlein, Anselm H. C. Horn, Senta Volkenandt, Leon Völcker, Nikoo Mokhtari, Jules Cesar Epee Ndongue, Petra Imhof
    Mode of Metal Ligation Governs Inhibition of Carboxypeptidase A
    Int. J. Mol. Sci. 2024, 25, 13725. (DOI: 10.3390/ijms252413725)
  • Michael Raucheisen, Dina Attia, Marlies Körber, Alejandra Aroca Crevillén, Andrés Hidalgo, Frank Beierlein, Petra Imhof, Andriy Mokhir
    Mitochondria-Catalyzed Activation of Anticancer Prodrugs
    ChemCatChem 2025, accepted. (DOI: 10.1002/cctc.202500054)

Talks

  • Frank Beierlein, Tim Clark
    Simulating the Induced Fit: A Combined QM/MM Docking Approach
    MGMS Young Modellers’ Forum in Conjunction with the RSC MMG, London, November 30, 2001.
  • Frank Beierlein, Tim Clark
    A QM/MM Docking Approach with a Flexible Protein Environment
    16. Darmstädter Molecular Modelling Workshop, Darmstadt, May 7-8, 2002.
  • Harald Lanig, Frank Beierlein, Olaf Othersen, Siegfried Schneider, Timothy Clark
    Combining Molecular Dynamics Simulations with Semiempirical CI-Calculations to Investigate Fluorescence Resonance Energy Transfer (FRET) within the Tetracycline Repressor
    43rd Sanibel Symposium, St. Augustine, Florida, February 22-March 1, 2003.
  • Frank Beierlein, Harald Lanig, Olaf Othersen, Siegfried Schneider, Timothy Clark
    An MD/CI Approach for the Investigation of Fluorescence Resonance Energy Transfer in Proteins
    17. Darmstädter Molecular Modelling Workshop, Erlangen, May 27-28, 2003.
  • Computer-Chemie-Centrum/AK Clark
    Tetracyclinresistenzen – eine Herausforderung für Simulation und Experiment
    Lange Nacht der Wissenschaften, Erlangen, 2003
  • Frank Beierlein, Harald Lanig, Olaf Othersen, Siegfried Schneider, Timothy Clark
    An MD/CI-approach simulating FRET in proteins
    227th ACS National Meeting, Anaheim, CA, March 28-April 1, 2004.
  • Anselm H. C. Horn, Frank Beierlein, Harald Lanig, Gudrun Schürer, Timothy Clark
    Quantum mechanical/molecular mechanical (QM/MM) docking: A new protocol and its evaluation for known test systems
    227th ACS National Meeting, Anaheim, CA, March 28-April 1, 2004.
  • Frank Beierlein, Olaf Othersen, Timothy Clark, Harald Lanig
    A Molecular Dynamics/Configuration Interaction (MD/CI)-Approach Simulating FRET in Proteins
    eCheminfo 2004 “Applications of Cheminformatics and Chemical Modelling to Drug Discovery”, November 8-19, 2004.
  • Frank Beierlein, Jon Essex
    Free Energy Studies of MAO-B
    IntBioSim Project Meeting, UCL, London, February 1-2, 2007.
  • Frank Beierlein, Jon Essex
    Correcting MM-Monte Carlo Energies by QM/MM Calculations
    IntBioSim Project Meeting, University of Oxford, Oxford, July 2-3, 2007.
  • Frank R. Beierlein, Olaf G. Othersen, Harald Lanig, Siegfried Schneider, Timothy Clark
    Understanding FRET Experiments for the Tetracycline Repressor
    EBSA Satellite meeting – Computational Biophysics: linking experiment and theory, Imperial College, London, July 19, 2007.
  • Frank Beierlein, Jon Essex
    QM/MM Binding Free Energy Calculations
    SWCC07, Cardiff University, Cardiff, Sept 26, 2007.
  • Frank Beierlein
    Protein-Ligand Binding Free Energy Calculations: From Classical MC to QM/MM
    Gemeinsames Seminar der Theoretischen Chemie und des Computer-Chemie-Centrums, Universität Erlangen-Nürnberg, Erlangen, Dec 17, 2007.
  • Frank Beierlein
    Current Applications of QM/MM: FRET and Free Energy Calculations
    Gemeinsames Seminar der Theoretischen Chemie und des Computer-Chemie-Centrums, Universität Erlangen-Nürnberg, Erlangen, May 19, 2008.
  • Frank Beierlein
    Understanding FRET Experiments for the Tetracycline Repressor
    2. Fränkisches Theoretikertreffen, Universität Würzburg, Würzburg, Nov 19-20, 2009.
  • Andreas Krause, Frank Beierlein, Christof Jäger, Piotr Fita, Eric Vauthey, Tim Clark
    Understanding the Fine Structure of Liquid-Liquid Interfaces
    27th Molecular Modeling Workshop, Erlangen, Feb 25-27, 2013.
  • Frank Beierlein
    Aggregation and Self-Organization of Flexible Molecules
    EAM Winter School I, Kirchberg/Tirol, Mar 11-14, 2013.
  • Frank Beierlein
    (Computational) Chemistry in Live Cells
    EFI Symposium 2018, Erlangen, May 10, 2018.
  • Frank Beierlein, Senta Volkenandt, Petra Imhof
    DNA-Repair Mechanisms: Molecular Simulations and Computational Alchemy
    35th Molecular Modeling Workshop, Erlangen, Mar 13-15, 2023.
  • Frank Beierlein, Janet Lovett, Maria Papa, Juan-Carlos Penedo, Edward Anderson
    Probing DNA/RNA Conformation: A Multi-Technique Approach
    37th Molecular Modeling Workshop, Erlangen, Mar 31-Apr 2, 2025.

Posters

  • Frank Beierlein, Harald Lanig, Gudrun Schürer, Anselm Horn and Tim Clark
    Simulating the Induced Fit: A Combined QM/MM Docking Approach
    Model(l)ing 2001, The Annual International Meeting of the Molecular Graphics and Modelling Society, Erlangen, September 17-21, 2001.
  • Jürgen Bulitta, Franz Schönfeld, Frank Beierlein, Harald Lanig, Timothy Clark and Reinhard Troschütz
    Chiral structure separation for drug synthesis: Docking of methotrexate and derivatives into the dihydrofolate reductase (DHFR) binding site
    17. Darmstädter Molecular Modelling Workshop, Erlangen, May 27-28, 2003.
  • Frank Beierlein, Harald Lanig, Olaf Othersen, Siegfried Schneider, Timothy Clark
    Simulating Fluorescence Resonance Energy Transfer: A Combined Molecular Dynamics-QM/MM-CI Approach
    45th Sanibel Symposium, St. Simons Island, GA, March 5-11, 2005.
  • Frank Beierlein, Olaf G. Othersen, Harald Lanig, Siegfried Schneider and Tim Clark
    Simulating FRET: A Combined Molecular Dynamics-QM/MM Approach
    19. Darmstädter Molecular Modelling Workshop, Erlangen, May 3-4, 2005.
  • Frank Beierlein, Jonathan Essex
    QM/MM Binding Free Energy Calculations
    Biomolecular Simulation 2008, Bristol, Jan 7-9, 2008.
  • Frank Beierlein, Jonathan Essex
    QM/MM Binding Free Energy Calculations
    22nd “Darmstadt” Molecular Modeling Workshop, Erlangen, April 29-30, 2008.
  • Jürgen Wittmann, Frank Beierlein, Harald Lanig, Christof Jäger, Tim Clark and Harald Gröger
    Rational Design of Enzyme Promiscuity by Molecular Model(l)ing: Theoretical Concepts towards non-Natural Biocatalytic Reactions
    Model(l)ing´09 – Annual Molecular Modelling Workshop & Annual International Meeting of the MGMS, Erlangen, Sept 6-11, 2009.
  • Frank Beierlein, Jonathan Essex
    A DFT-QM/MM-Approach to Consider Polarisation in Protein-Ligand Binding Free Energy Calculations
    Model(l)ing´09 – Annual Molecular Modelling Workshop & Annual International Meeting of the MGMS, Erlangen, Sept 6-11, 2009.
  • Frank Beierlein, Jonathan Essex
    A Multiscale Modelling Approach for Free Energies of Complexation
    2nd EAM Symposium, Kloster Banz/Bad Staffelstein, Nov 16-18, 2010.
  • Frank Beierlein, Gül Altinbas Özpinar, Timothy Clark, Wolfgang Peukert
    Urea Nanocrystals: Insights from Atomistic Molecular Dynamics Simulations
    2nd EAM Symposium, Kloster Banz/Bad Staffelstein, Nov 16-18, 2010.
  • Andreas Krause, Frank Beierlein, Christof Jäger, Piotr Fita, Eric Vauthey, Timothy Clark
    Molecular Dynamics Simulations of Multiphase Systems: Dyes as Probes for Local Viscosity at Liquid-Liquid Interfaces
    2nd EAM Symposium, Kloster Banz/Bad Staffelstein, Nov 16-18, 2010.
  • Frank Beierlein, Jonathan Essex
    A Simple QM/MM Approach for Capturing Polarization Effects in Protein-Ligand Binding Free Energy Calculations
    25th Molecular Modeling Workshop, Erlangen, April 4-6, 2011.
  • Frank Beierlein, Gül Altınbaş Özpınar, Wolfgang Peukert, Dirk Zahn, Timothy Clark
    A Test of Improved Force Field Parameters for Urea: Molecular-Dynamics Simulations of Urea Crystals
    3rd EAM Symposium, Oberhof, Nov 7-10, 2011.
  • Frank R. Beierlein, G. Geoff Kneale, Timothy Clark
    Predicting the Effects of Base-Pair Mutations in DNA-Protein Complexes by Thermodynamic Integration
    26th Molecular Modeling Workshop, Erlangen, March 12-14, 2012.
  • Andreas Krause, Frank Beierlein, Christof Jäger, Piotr Fita, Eric Vauthey, Tim Clark
    Molecular Dynamics Simulations of Multiphase Systems: Complementing Experimental SHG Studies
    EAM Summer School 2012, Kloster Banz/Bad Staffelstein, June 28-30, 2012.
  • Frank R. Beierlein, G. Geoff Kneale, Timothy Clark
    Predicting the Effects of Base-Pair Mutations in DNA-Protein Complexes by Thermodynamic Integration
    EAM Summer School 2012, Kloster Banz/Bad Staffelstein, June 28-30, 2012.
  • Andreas Krause, Frank Beierlein, Christof Jäger, Piotr Fita, Eric Vauthey, Tim Clark
    Molecular Dynamics Simulations of Multiphase Systems: Complementing Experimental SHG Studies
    4th EAM Symposium, Oberhof, Oct 22-24, 2012.
  • Frank R. Beierlein, Kathrin Engelhardt, Björn Braunschweig, Wolfgang Peukert, Timothy Clark
    Beta-Lactoglobulin at the Water-Air Interface: MD Simulations on Different Time and Length Scales
    4th EAM Symposium, Oberhof, Oct 22-24, 2012.
  • Frank Beierlein, Kathrin Engelhardt, Björn Braunschweig, Wolfgang Peukert, Timothy Clark
    Beta-Lactoglobulin at the Water-Air Interface: MD Simulations on Different Time and Length Scales
    27th Molecular Modeling Workshop, Erlangen, Feb 25-27, 2013.
  • Frank Beierlein, Kathrin Engelhardt, Björn Braunschweig, Wolfgang Peukert, Timothy Clark
    Beta-Lactoglobulin at the Water-Air Interface: MD Simulations on Different Time and Length Scales
    49th Symposium on Theoretical Chemistry 2013, Erlangen, Sept 22-26, 2013.
  • Andreas M. Krause, Frank Beierlein, Christof Jäger, Piotr Fita, Eric Vauthey, Tim Clark
    Molecular Dynamics Simulations of Liquid Phase Interfaces: Understanding the Structure of the Glycerol/Water-Dodecane System
    5th EAM Symposium, Kloster Banz/Bad Staffelstein, Nov 18-20, 2013.
  • Frank Beierlein, Björn Braunschweig, Kathrin Engelhardt, Johannes Walter, Wolfgang Peukert, Timothy Clark
    Multiscale Simulations of Foam Proteins
    5th EAM Symposium, Kloster Banz/Bad Staffelstein, Nov 18-20, 2013.
  • Frank Beierlein, Björn Braunschweig, Kathrin Engelhardt, Johannes Walter, Wolfgang Peukert, Timothy Clark
    Ion and pH Effects on Foam Protein Aggregation
    28th Molecular Modeling Workshop, Erlangen, Mar 17-19, 2014.
  • Frank Beierlein, Björn Braunschweig, Kathrin Engelhardt, Lena Glas, Wolfgang Peukert, Timothy Clark
    The Effects of Alkali Ions on the Aggregation and Interfacial Adsorption of beta-Lactoglobulin
    29th Molecular Modeling Workshop, Erlangen, Mar 9-11, 2015.
  • Frank Beierlein, Miguel Paradas Palomo, Dmitry I. Sharapa, Oleksii Zozulia, Andriy Mokhir, Timothy Clark
    DNA-Dye-Conjugates: Conformations and Spectra of Fluorescence Probes
    30th Molecular Modeling Workshop, Erlangen, Apr 4-6, 2016.
  • Frank Beierlein, Miguel Paradas Palomo, Dmitry I. Sharapa, Oleksii Zozulia, Andriy Mokhir, Timothy Clark
    DNA-Dye-Conjugates for Detecting Nucleic Acids in Live Cells
    31st Molecular Modeling Workshop, Erlangen, Mar 27-29, 2017.
  • Amir H. Hakimioun, Frank R. Beierlein, Dmitry I. Sharapa, Andriy Mokhir, Timothy Clark
    Enzyme-Independent Chemical Reactions for Chemistry in Living Cells
    31st Molecular Modeling Workshop, Erlangen, Mar 27-29, 2017.
  • Frank R. Beierlein, Janet E. Lovett, Edward A. Anderson
    Spin-Labelled DNA Oligomers: Simulation and Experiment
    32nd Molecular Modeling Workshop, Erlangen, Mar 12-14, 2018.
  • Amir H. Hakimioun, Frank R. Beierlein, Andriy Mokhir, Timothy Clark
    Enzyme-Independent Chemical Reactions for Chemistry in Living Cells
    32nd Molecular Modeling Workshop, Erlangen, Mar 12-14, 2018.
  • Frank R. Beierlein, Jack S. Hardwick, Marius M. Haugland, Afaf H. El-Sagheer, Denis Ptchelkine, Tom Brown, Janet E. Lovett, Edward A. Anderson
    A Multi-Technique Approach to DNA Structure Determination
    33rd Molecular Modeling Workshop, Erlangen, Apr 08-10, 2019.
  • Frank R. Beierlein, Jack S. Hardwick, Marius M. Haugland, Afaf H. El-Sagheer, Denis Ptchelkine, Andrew N. Lane, Tom Brown, Janet E. Lovett, Edward A. Anderson
    Probing DNA Conformation: A Multi-Technique Approach
    34th Molecular Modeling Workshop, Erlangen, Feb 17-19, 2020.
  • NHR@FAU, Computer-Chemie-Centrum/AK Imhof
    DNA-Reparatur im Supercomputer
    Lange Nacht der Wissenschaften, Erlangen, May 21, 2022
  • Frank Beierlein, Senta Volkenandt, Petra Imhof
    DNA-Repair Mechanisms: Molecular Simulations and Computational Alchemy
    35th Molecular Modeling Workshop, Erlangen, Mar 13-15, 2023.
  • Jorge Antonio Amador-Balderas, Frank Beierlein Senta Volkenandt, Petra Imhof
    Effect of N140D and T197A mutations on DNA repair enzyme Thymine DNA Glycosylase
    35th Molecular Modeling Workshop, Erlangen, Mar 13-15, 2023.
  • Frank Beierlein, Senta Volkenandt, Petra Imhof
    DNA-Repair Mechanisms: Molecular Simulations and Computational Alchemy
    Hybrid Workshop on Computer Simulation and Theory of Macromolecules, Hünfeld, April 28-29, 2023.
  • Frank Beierlein, Senta Volkenandt, Petra Imhof
    DNA-Repair Mechanisms: Molecular Simulations and Computational Alchemy
    NHR Conference ’23, Berlin, Sept 18-20, 2023.
  • NHR@FAU, Computer-Chemie-Centrum/AK Imhof
    DNA-Reparatur im Supercomputer
    Lange Nacht der Wissenschaften, Erlangen, Oct 21, 2023.
  • Jorge Antonio Amador Balderas, Frank Beierlein, Petra Imhof
    Insight into the active site conformation of DNA repair Enzyme MBD4 from molecular
    simulations
    36th Molecular Modeling Workshop, Erlangen, Mar 4-6, 2024.
  • Frank Beierlein, Anselm H. C. Horn, Heinrich Sticht, Andriy Mokhir, Petra Imhof
    In Silico Study of Binding of Camptothecin-Based Pro-Drugs to Human Carboxylesterase 2
    36th Molecular Modeling Workshop, Erlangen, Mar 4-6, 2024.
  • Frank R. Beierlein, Jack S. Hardwick, Marius M. Haugland, Afaf H. El-Sagheer, Denis Ptchelkine, Andrew N. Lane, Tom Brown, Janet E. Lovett, Edward A. Anderson
    Probing DNA Conformation: A Multi-Technique Approach
    37th Molecular Modeling Workshop, Erlangen, Mar 31-Apr 2, 2025.
  • Jorge Antonio Amador Balderas, Frank Beierlein, Anselm H. C. Horn, Senta Volkenandt, Leon Völcker, Nikoo Mokhtari, Jules Cesar Epee Ndongue, Petra Imhof
    Mode of Metal Ligation Governs Inhibition of Carboxypeptidase A
    37th Molecular Modeling Workshop, Erlangen, Mar 31-Apr 2, 2025.
Friedrich Alexander University Erlangen-Nürnberg
Department of Chemistry and Pharmacy

Nikolaus-Fiebiger-Str. 10
91058 Erlangen
Germany
  • Imprint
  • Privacy
  • Accessibility
  • RSS Feed
  • Instagram
Up