• Skip navigation
  • Skip to navigation
  • Skip to the bottom
Simulate organization breadcrumb open Simulate organization breadcrumb close
Department of Chemistry and Pharmacy
  • FAUTo the central FAU website
  1. Friedrich-Alexander-Universität
  2. Naturwissenschaftliche Fakultät
  3. Department Chemie und Pharmazie
Suche öffnen
    • Campo
    • StudOn
    • FAUdir
    • Jobs
    • Map
    • Help
    1. Friedrich-Alexander-Universität
    2. Naturwissenschaftliche Fakultät
    3. Department Chemie und Pharmazie

    Department of Chemistry and Pharmacy

    Navigation Navigation close
    • Department
      • Administrative Office
      • Boards
      • Sections
      • Centers
      Portal Department
    • Research
      • Sections
      • Research areas
      • Research groups
      • Young investigators
      Portal Research
    • Study
      • Chemistry / Molecular Science
      • Pharmacy
      • Food Chemistry
      • PhD studies
      Portal Study
    • Events
    1. Home
    2. Computer Chemistry Center
    3. People and Groups
    4. Dr. Frank Beierlein
    5. Publications

    Publications

    In page navigation: Computer Chemistry Center
    • People and Groups
      • Prof. Dr. Petra Imhof
      • Prof. Dr. Tim Clark
      • Prof. Dr. Bernd Meyer
      • Prof. Dr. Carolin Müller
      • Prof. Dr. David Smith
      • Prof. Dr. Dirk Zahn
      • PD Dr. Harald Lanig
      • Dr. rer. nat. habil. Tatyana Shubina
      • Dr. Thilo Bauer
      • Dr. Frank Beierlein
        • Publications
        • Research
        • Teaching
      • Dr. Nico van Eikema Hommes
    • Research
    • Conferences
    • Journals
    • Internal

    Publications

    Dr. Frank Beierlein: Publications, Talks and Posters

     

    Publications from FAU Current Research Information System (CRIS)

    2025

    • Raucheisen M., Attia D., Körber M., Crevillén AA., Hidalgo A., Beierlein F., Imhof P., Mokhir A.:
      Mitochondria-Catalyzed Activation of Anticancer Prodrugs
      In: ChemCatChem (2025)
      ISSN: 1867-3880
      DOI: 10.1002/cctc.202500054

    2024

    • Amador Balderas JA., Beierlein F., Horn A., Volkenandt S., Völcker L., Mokhtari N., Epee Ndongue JC., Imhof P.:
      Mode of Metal Ligation Governs Inhibition of Carboxypeptidase A
      In: International Journal of Molecular Sciences 25 (2024), p. 13725
      ISSN: 1422-0067
      DOI: 10.3390/ijms252413725
    • Beierlein F., Horn A., Sticht H., Mokhir A., Imhof P.:
      In Silico Study of Camptothecin-Based Pro-Drugs Binding to Human Carboxylesterase 2
      In: Biomolecules 14 (2024), Article No.: 153
      ISSN: 2218-273X
      DOI: 10.3390/biom14020153
    • Handke M., Beierlein F., Imhof P., Schiedel M., Hammann S.:
      New fluorogenic triacylglycerols as sensors for dynamic measurement of lipid oxidation
      In: Analytical and Bioanalytical Chemistry (2024)
      ISSN: 1618-2642
      DOI: 10.1007/s00216-024-05642-w
    • Klemt I., Reshetnikov V., Dutta S., Bila G., Bilyy R., Cuartero IC., Hidalgo A., Wünsche A., Böhm M., Wondrak M., Kunz-Schughart LA., Tietze R., Beierlein F., Imhof P., Gensberger-Reigl S., Pischetsrieder M., Körber M., Jost T., Mokhir A.:
      A concept of dual-responsive prodrugs based on oligomerization-controlled reactivity of ester groups: an improvement of cancer cells versus neutrophils selectivity of camptothecin
      In: RSC Medicinal Chemistry (2024)
      ISSN: 2632-8682
      DOI: 10.1039/d3md00609c

    2022

    • Beierlein F., Volkenandt S., Imhof P.:
      Oxidation Enhances Binding of Extrahelical 5-Methyl-Cytosines by Thymine DNA Glycosylase
      In: Journal of Physical Chemistry B 126 (2022), p. 1188-1201
      ISSN: 1520-6106
      DOI: 10.1021/acs.jpcb.1c09896

    2021

    • Volkenandt S., Beierlein F., Imhof P.:
      Interaction of thymine dna glycosylase with oxidised 5-methyl-cytosines in their amino-and imino-forms
      In: Molecules 26 (2021), Article No.: 5728
      ISSN: 1420-3049
      DOI: 10.3390/molecules26195728

    2020

    • Eberlein L., Beierlein F., van Eikema Hommes N., Radadiya A., Heil J., Benner SA., Clark T., Kast SM., Richards NG.:
      Tautomeric Equilibria of Nucleobases in the Hachimoji Expanded Genetic Alphabet
      In: Journal of Chemical Theory and Computation 16 (2020), p. 2766-2777
      ISSN: 1549-9618
      DOI: 10.1021/acs.jctc.9b01079
    • Hardwick JS., Haugland MM., El-Sagheer AH., Ptchelkine D., Beierlein F., Lane AN., Brown T., Lovett JE., Anderson EA.:
      2'-Alkynyl spin-labelling is a minimally perturbing tool for DNA structural analysis
      In: Nucleic Acids Research 48 (2020), p. 2830-2840
      ISSN: 0305-1048
      DOI: 10.1093/nar/gkaa086

    2019

    • Chercheja S., Daum S., Xu H., Beierlein F., Mokhir A.:
      Hybrids of a 9-anthracenyl moiety and fluorescein as chemodosimeters for the detection of singlet oxygen in live cells
      In: Organic & Biomolecular Chemistry 17 (2019), p. 9883-9891
      ISSN: 1477-0520
      DOI: 10.1039/c9ob02070e
    • Daum S., Toms J., Reshetnikov V., Özkan H., Hampel F., Maschauer S., Hakimioun AH., Beierlein F., Sellner L., Schmitt M., Prante O., Mokhir A.:
      Identification of Boronic Acid Derivatives as an Active Form of N-Alkylaminoferrocene-Based Anticancer Prodrugs and Their Radiolabeling with 18F
      In: Bioconjugate Chemistry 30 (2019), p. 1077-1086
      ISSN: 1043-1802
      DOI: 10.1021/acs.bioconjchem.9b00019
    • Kriebel M., Hennemann M., Beierlein F., Medina DD., Bein T., Clark T.:
      Propagation of Holes and Electrons in Metal-Organic Frameworks
      In: Journal of Chemical Information and Modeling (2019)
      ISSN: 1549-9596
      DOI: 10.1021/acs.jcim.9b00461
    • Zozulia O., Bachmann T., Deussner-Helfmann NS., Beierlein F., Heilemann M., Mokhir A.:
      Red light-triggered nucleic acid-templated reaction based on cyclic oligonucleotide substrates
      In: Chemical Communications 55 (2019), p. 10713-10716
      ISSN: 1359-7345
      DOI: 10.1039/c9cc03587g

    2016

    • Beierlein F., Paradas Palomo M., Sharapa D., Zozulia O., Mokhir A., Clark T.:
      DNA-Dye-Conjugates: Conformations and Spectra of Fluorescence Probes
      In: Plos One 11 (2016), p. e0160229
      DOI: 10.1371/journal.pone.0160229

    2015

    • Beierlein F., Clark T., Braunschweig B., Engelhardt K., Glas L., Peukert W.:
      Carboxylate Ion Pairing with Alkali-Metal Ions for β-Lactoglobulin and Its Role on Aggregation and Interfacial Adsorption
      In: Journal of Physical Chemistry B 119 (2015), p. 5505-5517
      ISSN: 1520-6106
      DOI: 10.1021/acs.jpcb.5b01944

    2013

    • Beierlein F., Krause A., Jäger C., Fita P., Vauthey E., Clark T.:
      Molecular Dynamics Simulations of Liquid Phase Interfaces: Understanding the Structure of the Glycerol/Water–Dodecane System
      In: Langmuir 29 (2013), p. 11898--11907
      ISSN: 0743-7463
      DOI: 10.1021/la4021355

    2012

    • Ozpinar GA., Beierlein F., Peukert W., Zahn D., Clark T.:
      A test of improved force field parameters for urea: molecular-dynamics simulations of urea crystals
      In: Journal of Molecular Modeling 18 (2012), p. 3455--3466
      ISSN: 0948-5023
      DOI: 10.1007/s00894-011-1336-5

    2011

    • Beierlein F., Kneale GG., Clark T.:
      Predicting the Effects of Basepair Mutations in DNA-Protein Complexes by Thermodynamic Integration
      In: Biophysical Journal 101 (2011), p. 1130--1138
      ISSN: 0006-3495
      DOI: 10.1016/j.bpj.2011.07.003
    • Beierlein F., Michel J., Essex J.:
      A Simple QM/MM Approach for Capturing Polarization Effects in Protein-Ligand Binding Free Energy Calculations
      In: Journal of Physical Chemistry B 115 (2011), p. 4911-4926
      ISSN: 1520-6106
      DOI: 10.1021/jp109054j

    2007

    • Seidel U., Othersen O., Lanig H., Beierlein F., Clark T.:
      Molecular Dynamics Characterization of the Structures and Induction Mechanisms of a Reverse Phenotype of the Tetracycline Receptor
      In: Journal of Physical Chemistry B 111 (2007), p. 6006-6014
      ISSN: 1520-6106
      DOI: 10.1021/jp0674468

    2006

    • Beierlein F., Othersen O., Lanig H., Schneider S., Clark T.:
      Simulating FRET from tryptophan: Is the rotamer model correct?
      In: Journal of the American Chemical Society 128 (2006), p. 5142-5152
      ISSN: 0002-7863
      DOI: 10.1021/ja058414l
    • Lanig H., Othersen O., Beierlein F., Seidel U., Clark T.:
      Molecular dynamics simulations of the tetracycline-repressor protein: The mechanism of induction
      In: Journal of Molecular Biology 359 (2006), p. 1125-1136
      ISSN: 0022-2836
      DOI: 10.1016/j.jmb.2006.04.014
    • Lanig H., Othersen O., Seidel U., Beierlein F., Exner T., Clark T.:
      Structural changes and binding characteristics of the tetracycline-repressor binding site on induction
      In: Journal of Medicinal Chemistry 49 (2006), p. 3444-3447
      ISSN: 0022-2623
      DOI: 10.1021/jm060289g

    2004

    • Beierlein F., Clark T.:
      Computer simulations of enzyme reaction mechanisms: Simulation of protein spectra
      2004
      DOI: 10.1007/3-540-26657-7_22
    • Beierlein F., Lanig H., Othersen O., Schneider S., Clark T.:
      MD/CI-approach simulating FRET in proteins.
      In: ACS National Meeting Book of Abstracts 227 (2004), p. U1025-U1025
      ISSN: 0065-7727
      (anderer)
    • Horn A., Beierlein F., Lanig H., Schürer G., Clark T.:
      Quantum mechanical/molecular mechanical (QM/MM) docking: A new protocol and its evaluation for known test systems.
      In: ACS National Meeting Book of Abstracts 227 (2004), p. U1025-U1025
      ISSN: 0065-7727
      (Zeitungsartikel)

    2003

    • Beierlein F., Lanig H., Schürer G., Horn A., Clark T.:
      Quantum mechanical/molecular mechanical (QM/MM) docking: an evaluation for known test systems
      In: Molecular Physics 101 (2003), p. 2469-2480
      ISSN: 0026-8976
      DOI: 10.1080/0026897031000092940
    • Othersen O., Beierlein F., Lanig H., Clark T.:
      Conformations and tautomers of tetracycline
      In: Journal of Physical Chemistry B 107 (2003), p. 13743-13749
      ISSN: 1520-6106
      DOI: 10.1021/jp0364506

     

    Publications – Complete List

    • Frank Beierlein, Harald Lanig, Gudrun Schürer, Anselm H. C. Horn and Timothy Clark
      Quantum Mechanical/Molecular Mechanical (QM/MM) Docking: An Evaluation for Known Test Systems
      Mol. Phys. 2003, 101, 2469-2480. (DOI: 10.1080/0026897031000092940)
    • Olaf G. Othersen, Frank Beierlein, Harald Lanig and Timothy Clark
      Conformations and Tautomers of Tetracycline
      J. Phys. Chem. B 2003, 107, 13743-13749. (DOI: 10.1021/jp0364506)
    • Frank Beierlein and Timothy Clark
      Computer Simulations of Enzyme Reaction Mechanisms: Simulation of Protein Spectra
      in High Performance Computing in Science and Engineering, Munich 2004 – Transactions of the Second Joint HLRB and KONWIHR Status and Result Workshop, March 2-3, 2004, Technical University of Munich and Leibnitz-Rechenzentrum Munich, Germany (Eds.: S. Wagner, W. Hanke, A. Bode, F. Durst)
      Springer-Verlag, Berlin, Heidelberg, New York, 2004, pp. 245-260.
    • Frank Beierlein
      QM/MM Docking and Simulations of FRET
      PhD thesis, Universität Erlangen-Nürnberg, Erlangen, 2005.
    • Frank R. Beierlein, Olaf G. Othersen, Harald Lanig, Siegfried Schneider and Timothy Clark
      Simulating FRET from Tryptophan: Is the Rotamer Model Correct?
      J. Am. Chem. Soc. 2006, 128, 5142-5152. (DOI: 10.1021/ja058414l)
    • Harald Lanig, Olaf G. Othersen, Frank R. Beierlein, Ute Seidel and Timothy Clark
      Molecular Dynamics Simulations of the Tetracycline-Repressor Protein: The Mechanism of Induction
      J. Mol. Biol. 2006, 359, 1125–1136. (DOI: 10.1016/j.jmb.2006.04.014)
    • Harald Lanig, Olaf G. Othersen, Ute Seidel, Frank R. Beierlein, Thomas Exner and Timothy Clark
      Structural Changes and Binding Characteristics of the Tetracycline-Repressor Binding Site on Induction
      J. Med. Chem. 2006, 49, 3444-3447. (DOI: 10.1021/jm060289g)
    • Ute Seidel, Olaf G. Othersen, Harald Lanig, Frank R. Beierlein and Timothy Clark
      Molecular Dynamics Characterization of the Structures and Induction Mechanisms of a Reverse Phenotype of the Tetracycline Receptor
      J. Phys. Chem. B 2007, 111, 6006-6014. (DOI: 10.1021/jp0674468)
    • Frank R. Beierlein, Julien Michel and Jonathan W. Essex
      A Simple QM/MM Approach for Capturing Polarization Effects in Protein-Ligand Binding Free Energy Calculations
      J. Phys. Chem. B 2011, 115, 4911-4926. (DOI: 10.1021/jp109054j)
    • Frank R. Beierlein, G. Geoff Kneale and Timothy Clark
      Predicting the Effects of Basepair Mutations in DNA-Protein Complexes by Thermodynamic Integration
      Biophys. J. 2011, 101, 1130-1138. (DOI: 10.1016/j.bpj.2011.07.003)
    • Gül Altınbaş Özpınar, Frank R. Beierlein, Wolfgang Peukert, Dirk Zahn and Timothy Clark
      (Gül Altınbaş Özpınar and Frank R. Beierlein contributed equally to this work)
      A Test of Improved Force Field Parameters for Urea: Molecular-Dynamics Simulations of Urea Crystals
      J. Mol. Model. 2012, 18, 3455-3466. (DOI: 10.1007/s00894-011-1336-5)
    • Frank R. Beierlein, Andreas M. Krause, Christof M. Jäger, Piotr Fita, Eric Vauthey and Timothy Clark
      Molecular Dynamics Simulations of Liquid Phase Interfaces: Understanding the Structure of the Glycerol/Water-Dodecane System
      Langmuir 2013, 29, 11898-11907. (DOI: 10.1021/la4021355)
    • Frank R. Beierlein, Timothy Clark, Björn Braunschweig, Kathrin Engelhardt, Lena Glas and Wolfgang Peukert
      Carboxylate Ion-Pairing with Alkali-Metal Ions for Beta-Lactoglobulin and Its Role on Aggregation and Interfacial Adsorption
      J. Phys. Chem. B 2015, 119, 5505-5517. (DOI: 10.1021/acs.jpcb.5b01944)
    • Frank R. Beierlein,* Miguel Paradas Palomo, Dmitry I. Sharapa, Oleksii Zozulia, Andriy Mokhir and Timothy Clark
      DNA-Dye-Conjugates: Conformations and Spectra of Fluorescence Probes
      PLoS ONE 2016, 11(7), e0160229. (DOI: 10.1371/journal.pone.0160229)
    • S. Daum, J. Toms, V. Reshetnikov, H. G. Özkan, F. Hampel, S. Maschauer, A. Hakimioun, F. Beierlein, L. Sellner, M. Schmitt, O. Prante, A. Mokhir
      Identification of Boronic Acid Derivatives as an Active Form of N-Alkylaminoferrocene-Based Anticancer Prodrugs and Their Radiolabeling with 18F
      Bioconjugate Chem. 2019, 30, 1077-1086. (DOI: 10.1021/acs.bioconjchem.9b00019)
    • O. Zozulia, T. Bachmann, N. Deussner-Helfmann, F. Beierlein, M. Heilemann, A. Mokhir
      Red light-triggered nucleic acid-templated reaction based on cyclic oligonucleotide substrates
      Chem. Commun. 2019, 55, 10713-10716. (DOI: 10.1039/C9CC03587G)
    • S. Chercheja, S. Daum, H.-G. Xu, F. R. Beierlein, A. Mokhir
      Hybrids of a 9-anthracenyl moiety and fluorescein as chemodosimeters for detection of singlet oxygen in live cells
      Org. Biomol. Chem. 2019, 17, 9883-9891. (DOI: 10.1039/C9OB02070E).
    • M. Kriebel, M. Hennemann, F. R. Beierlein, D. D. Medina, T. Bein, T. Clark
      Propagation of Holes and Electrons in Metal-Organic Frameworks
      J. Chem. Inf. Model. 2019, 59, 5057-5064. (DOI: 10.1021/acs.jcim.9b00461)
    • J. S. Hardwick, M. M. Haugland, A. H. El-Sagheer, D. Ptchelkine, F. R. Beierlein, A. N. Lane, T. Brown, J. E. Lovett, E. A. Anderson
      2′-Alkynyl spin-labelling is a minimally perturbing tool for DNA structural analysis
      Nucleic Acids Res. 2020, 48, 2830-2840. (DOI: 10.1093/nar/gkaa086)
    • L. Eberlein, F. R. Beierlein, N. J. R. van Eikema Hommes, A. Radadiya, J. Heil, S. A. Benner, T. Clark, S. M. Kast, N. G. J. Richards
      Tautomeric Equilibria of Nucleobases in the Hachimoji Expanded Genetic Alphabet
      J. Chem. Theory Comput. 2020, 16, 2766-2777. (DOI: 10.1021/acs.jctc.9b01079)
    • S. Volkenandt, F. Beierlein, P. Imhof
      (S. Volkenandt and F. Beierlein contributed equally)
      Interaction of Thymine DNA Glycosylase with Oxidised 5-Methyl-Cytosines in their Amino- and Imino-Forms
      Molecules 2021, 26, 5728. (DOI: 10.3390/molecules26195728)
    • Frank Beierlein, Senta Volkenandt, Petra Imhof
      Oxidation Enhances Binding of Extra-Helical 5-Methyl-Cytosines by Thymine DNA Glycosylase
      J. Phys. Chem. B 2022, 126, 6, 1188-1201. (DOI: 10.1021/acs.jpcb.1c09896)
    • I. Klemt, V. Reshetnikov, S. Dutta, G. Bila, R. Bilyy, I. C. Cuartero, A. Hidalgo, A. Wünsche, M. Böhm, M. Wondrak, L. A. Kunz-Schughart, R. Tietze, F. Beierlein, P. Imhof, S. Gensberger-Reigl, M. Pischetsrieder, M. Körber, T. Jost, A. Mokhir
      A concept of dual-responsive prodrugs based on oligomerization-controlled reactivity of ester groups: an improvement of cancer cells versus neutrophils selectivity of camptothecin
      RSC Med. Chem. 2024, 15, 1189-1197. (DOI: 10.1039/D3MD00609C)
    • Frank Beierlein, Anselm H. C. Horn, Heinrich Sticht, Andriy Mokhir, Petra Imhof
      In Silico Study of Binding of Camptothecin-Based Pro-Drugs to Human Carboxylesterase 2
      Biomolecules 2024, 14, 153. (DOI: 10.3390/biom14020153)
    • Maria Handke, Frank Beierlein, Petra Imhof, Matthias Schiedel, Simon Hammann
      New fluorogenic triacylglycerols as sensors for dynamic measurement of lipid oxidation
      Anal. Bioanal. Chem. 2024, 417, 287-296. (DOI: 10.1007/s00216-024-05642-w)
    • Jorge Antonio Amador Balderas, Frank Beierlein, Anselm H. C. Horn, Senta Volkenandt, Leon Völcker, Nikoo Mokhtari, Jules Cesar Epee Ndongue, Petra Imhof
      Mode of Metal Ligation Governs Inhibition of Carboxypeptidase A
      Int. J. Mol. Sci. 2024, 25, 13725. (DOI: 10.3390/ijms252413725)
    • Michael Raucheisen, Dina Attia, Marlies Körber, Alejandra Aroca Crevillén, Andrés Hidalgo, Frank Beierlein, Petra Imhof, Andriy Mokhir
      Mitochondria-Catalyzed Activation of Anticancer Prodrugs
      ChemCatChem 2025, e202500054. (DOI: 10.1002/cctc.202500054)

    Talks

    • Frank Beierlein, Tim Clark
      Simulating the Induced Fit: A Combined QM/MM Docking Approach
      MGMS Young Modellers’ Forum in Conjunction with the RSC MMG, London, November 30, 2001.
    • Frank Beierlein, Tim Clark
      A QM/MM Docking Approach with a Flexible Protein Environment
      16. Darmstädter Molecular Modelling Workshop, Darmstadt, May 7-8, 2002.
    • Harald Lanig, Frank Beierlein, Olaf Othersen, Siegfried Schneider, Timothy Clark
      Combining Molecular Dynamics Simulations with Semiempirical CI-Calculations to Investigate Fluorescence Resonance Energy Transfer (FRET) within the Tetracycline Repressor
      43rd Sanibel Symposium, St. Augustine, Florida, February 22-March 1, 2003.
    • Frank Beierlein, Harald Lanig, Olaf Othersen, Siegfried Schneider, Timothy Clark
      An MD/CI Approach for the Investigation of Fluorescence Resonance Energy Transfer in Proteins
      17. Darmstädter Molecular Modelling Workshop, Erlangen, May 27-28, 2003.
    • Computer-Chemie-Centrum/AK Clark
      Tetracyclinresistenzen – eine Herausforderung für Simulation und Experiment
      Lange Nacht der Wissenschaften, Erlangen, 2003
    • Frank Beierlein, Harald Lanig, Olaf Othersen, Siegfried Schneider, Timothy Clark
      An MD/CI-approach simulating FRET in proteins
      227th ACS National Meeting, Anaheim, CA, March 28-April 1, 2004.
    • Anselm H. C. Horn, Frank Beierlein, Harald Lanig, Gudrun Schürer, Timothy Clark
      Quantum mechanical/molecular mechanical (QM/MM) docking: A new protocol and its evaluation for known test systems
      227th ACS National Meeting, Anaheim, CA, March 28-April 1, 2004.
    • Frank Beierlein, Olaf Othersen, Timothy Clark, Harald Lanig
      A Molecular Dynamics/Configuration Interaction (MD/CI)-Approach Simulating FRET in Proteins
      eCheminfo 2004 “Applications of Cheminformatics and Chemical Modelling to Drug Discovery”, November 8-19, 2004.
    • Frank Beierlein, Jon Essex
      Free Energy Studies of MAO-B
      IntBioSim Project Meeting, UCL, London, February 1-2, 2007.
    • Frank Beierlein, Jon Essex
      Correcting MM-Monte Carlo Energies by QM/MM Calculations
      IntBioSim Project Meeting, University of Oxford, Oxford, July 2-3, 2007.
    • Frank R. Beierlein, Olaf G. Othersen, Harald Lanig, Siegfried Schneider, Timothy Clark
      Understanding FRET Experiments for the Tetracycline Repressor
      EBSA Satellite meeting – Computational Biophysics: linking experiment and theory, Imperial College, London, July 19, 2007.
    • Frank Beierlein, Jon Essex
      QM/MM Binding Free Energy Calculations
      SWCC07, Cardiff University, Cardiff, Sept 26, 2007.
    • Frank Beierlein
      Protein-Ligand Binding Free Energy Calculations: From Classical MC to QM/MM
      Gemeinsames Seminar der Theoretischen Chemie und des Computer-Chemie-Centrums, Universität Erlangen-Nürnberg, Erlangen, Dec 17, 2007.
    • Frank Beierlein
      Current Applications of QM/MM: FRET and Free Energy Calculations
      Gemeinsames Seminar der Theoretischen Chemie und des Computer-Chemie-Centrums, Universität Erlangen-Nürnberg, Erlangen, May 19, 2008.
    • Frank Beierlein
      Understanding FRET Experiments for the Tetracycline Repressor
      2. Fränkisches Theoretikertreffen, Universität Würzburg, Würzburg, Nov 19-20, 2009.
    • Andreas Krause, Frank Beierlein, Christof Jäger, Piotr Fita, Eric Vauthey, Tim Clark
      Understanding the Fine Structure of Liquid-Liquid Interfaces
      27th Molecular Modeling Workshop, Erlangen, Feb 25-27, 2013.
    • Frank Beierlein
      Aggregation and Self-Organization of Flexible Molecules
      EAM Winter School I, Kirchberg/Tirol, Mar 11-14, 2013.
    • Frank Beierlein
      (Computational) Chemistry in Live Cells
      EFI Symposium 2018, Erlangen, May 10, 2018.
    • Frank Beierlein, Senta Volkenandt, Petra Imhof
      DNA-Repair Mechanisms: Molecular Simulations and Computational Alchemy
      35th Molecular Modeling Workshop, Erlangen, Mar 13-15, 2023.
    • Frank Beierlein, Janet Lovett, Maria Papa, Juan-Carlos Penedo, Edward Anderson
      Probing DNA/RNA Conformation: A Multi-Technique Approach
      37th Molecular Modeling Workshop, Erlangen, Mar 31-Apr 2, 2025.

    Posters

    • Frank Beierlein, Harald Lanig, Gudrun Schürer, Anselm Horn and Tim Clark
      Simulating the Induced Fit: A Combined QM/MM Docking Approach
      Model(l)ing 2001, The Annual International Meeting of the Molecular Graphics and Modelling Society, Erlangen, September 17-21, 2001.
    • Jürgen Bulitta, Franz Schönfeld, Frank Beierlein, Harald Lanig, Timothy Clark and Reinhard Troschütz
      Chiral structure separation for drug synthesis: Docking of methotrexate and derivatives into the dihydrofolate reductase (DHFR) binding site
      17. Darmstädter Molecular Modelling Workshop, Erlangen, May 27-28, 2003.
    • Frank Beierlein, Harald Lanig, Olaf Othersen, Siegfried Schneider, Timothy Clark
      Simulating Fluorescence Resonance Energy Transfer: A Combined Molecular Dynamics-QM/MM-CI Approach
      45th Sanibel Symposium, St. Simons Island, GA, March 5-11, 2005.
    • Frank Beierlein, Olaf G. Othersen, Harald Lanig, Siegfried Schneider and Tim Clark
      Simulating FRET: A Combined Molecular Dynamics-QM/MM Approach
      19. Darmstädter Molecular Modelling Workshop, Erlangen, May 3-4, 2005.
    • Frank Beierlein, Jonathan Essex
      QM/MM Binding Free Energy Calculations
      Biomolecular Simulation 2008, Bristol, Jan 7-9, 2008.
    • Frank Beierlein, Jonathan Essex
      QM/MM Binding Free Energy Calculations
      22nd “Darmstadt” Molecular Modeling Workshop, Erlangen, April 29-30, 2008.
    • Jürgen Wittmann, Frank Beierlein, Harald Lanig, Christof Jäger, Tim Clark and Harald Gröger
      Rational Design of Enzyme Promiscuity by Molecular Model(l)ing: Theoretical Concepts towards non-Natural Biocatalytic Reactions
      Model(l)ing´09 – Annual Molecular Modelling Workshop & Annual International Meeting of the MGMS, Erlangen, Sept 6-11, 2009.
    • Frank Beierlein, Jonathan Essex
      A DFT-QM/MM-Approach to Consider Polarisation in Protein-Ligand Binding Free Energy Calculations
      Model(l)ing´09 – Annual Molecular Modelling Workshop & Annual International Meeting of the MGMS, Erlangen, Sept 6-11, 2009.
    • Frank Beierlein, Jonathan Essex
      A Multiscale Modelling Approach for Free Energies of Complexation
      2nd EAM Symposium, Kloster Banz/Bad Staffelstein, Nov 16-18, 2010.
    • Frank Beierlein, Gül Altinbas Özpinar, Timothy Clark, Wolfgang Peukert
      Urea Nanocrystals: Insights from Atomistic Molecular Dynamics Simulations
      2nd EAM Symposium, Kloster Banz/Bad Staffelstein, Nov 16-18, 2010.
    • Andreas Krause, Frank Beierlein, Christof Jäger, Piotr Fita, Eric Vauthey, Timothy Clark
      Molecular Dynamics Simulations of Multiphase Systems: Dyes as Probes for Local Viscosity at Liquid-Liquid Interfaces
      2nd EAM Symposium, Kloster Banz/Bad Staffelstein, Nov 16-18, 2010.
    • Frank Beierlein, Jonathan Essex
      A Simple QM/MM Approach for Capturing Polarization Effects in Protein-Ligand Binding Free Energy Calculations
      25th Molecular Modeling Workshop, Erlangen, April 4-6, 2011.
    • Frank Beierlein, Gül Altınbaş Özpınar, Wolfgang Peukert, Dirk Zahn, Timothy Clark
      A Test of Improved Force Field Parameters for Urea: Molecular-Dynamics Simulations of Urea Crystals
      3rd EAM Symposium, Oberhof, Nov 7-10, 2011.
    • Frank R. Beierlein, G. Geoff Kneale, Timothy Clark
      Predicting the Effects of Base-Pair Mutations in DNA-Protein Complexes by Thermodynamic Integration
      26th Molecular Modeling Workshop, Erlangen, March 12-14, 2012.
    • Andreas Krause, Frank Beierlein, Christof Jäger, Piotr Fita, Eric Vauthey, Tim Clark
      Molecular Dynamics Simulations of Multiphase Systems: Complementing Experimental SHG Studies
      EAM Summer School 2012, Kloster Banz/Bad Staffelstein, June 28-30, 2012.
    • Frank R. Beierlein, G. Geoff Kneale, Timothy Clark
      Predicting the Effects of Base-Pair Mutations in DNA-Protein Complexes by Thermodynamic Integration
      EAM Summer School 2012, Kloster Banz/Bad Staffelstein, June 28-30, 2012.
    • Andreas Krause, Frank Beierlein, Christof Jäger, Piotr Fita, Eric Vauthey, Tim Clark
      Molecular Dynamics Simulations of Multiphase Systems: Complementing Experimental SHG Studies
      4th EAM Symposium, Oberhof, Oct 22-24, 2012.
    • Frank R. Beierlein, Kathrin Engelhardt, Björn Braunschweig, Wolfgang Peukert, Timothy Clark
      Beta-Lactoglobulin at the Water-Air Interface: MD Simulations on Different Time and Length Scales
      4th EAM Symposium, Oberhof, Oct 22-24, 2012.
    • Frank Beierlein, Kathrin Engelhardt, Björn Braunschweig, Wolfgang Peukert, Timothy Clark
      Beta-Lactoglobulin at the Water-Air Interface: MD Simulations on Different Time and Length Scales
      27th Molecular Modeling Workshop, Erlangen, Feb 25-27, 2013.
    • Frank Beierlein, Kathrin Engelhardt, Björn Braunschweig, Wolfgang Peukert, Timothy Clark
      Beta-Lactoglobulin at the Water-Air Interface: MD Simulations on Different Time and Length Scales
      49th Symposium on Theoretical Chemistry 2013, Erlangen, Sept 22-26, 2013.
    • Andreas M. Krause, Frank Beierlein, Christof Jäger, Piotr Fita, Eric Vauthey, Tim Clark
      Molecular Dynamics Simulations of Liquid Phase Interfaces: Understanding the Structure of the Glycerol/Water-Dodecane System
      5th EAM Symposium, Kloster Banz/Bad Staffelstein, Nov 18-20, 2013.
    • Frank Beierlein, Björn Braunschweig, Kathrin Engelhardt, Johannes Walter, Wolfgang Peukert, Timothy Clark
      Multiscale Simulations of Foam Proteins
      5th EAM Symposium, Kloster Banz/Bad Staffelstein, Nov 18-20, 2013.
    • Frank Beierlein, Björn Braunschweig, Kathrin Engelhardt, Johannes Walter, Wolfgang Peukert, Timothy Clark
      Ion and pH Effects on Foam Protein Aggregation
      28th Molecular Modeling Workshop, Erlangen, Mar 17-19, 2014.
    • Frank Beierlein, Björn Braunschweig, Kathrin Engelhardt, Lena Glas, Wolfgang Peukert, Timothy Clark
      The Effects of Alkali Ions on the Aggregation and Interfacial Adsorption of beta-Lactoglobulin
      29th Molecular Modeling Workshop, Erlangen, Mar 9-11, 2015.
    • Frank Beierlein, Miguel Paradas Palomo, Dmitry I. Sharapa, Oleksii Zozulia, Andriy Mokhir, Timothy Clark
      DNA-Dye-Conjugates: Conformations and Spectra of Fluorescence Probes
      30th Molecular Modeling Workshop, Erlangen, Apr 4-6, 2016.
    • Frank Beierlein, Miguel Paradas Palomo, Dmitry I. Sharapa, Oleksii Zozulia, Andriy Mokhir, Timothy Clark
      DNA-Dye-Conjugates for Detecting Nucleic Acids in Live Cells
      31st Molecular Modeling Workshop, Erlangen, Mar 27-29, 2017.
    • Amir H. Hakimioun, Frank R. Beierlein, Dmitry I. Sharapa, Andriy Mokhir, Timothy Clark
      Enzyme-Independent Chemical Reactions for Chemistry in Living Cells
      31st Molecular Modeling Workshop, Erlangen, Mar 27-29, 2017.
    • Frank R. Beierlein, Janet E. Lovett, Edward A. Anderson
      Spin-Labelled DNA Oligomers: Simulation and Experiment
      32nd Molecular Modeling Workshop, Erlangen, Mar 12-14, 2018.
    • Amir H. Hakimioun, Frank R. Beierlein, Andriy Mokhir, Timothy Clark
      Enzyme-Independent Chemical Reactions for Chemistry in Living Cells
      32nd Molecular Modeling Workshop, Erlangen, Mar 12-14, 2018.
    • Frank R. Beierlein, Jack S. Hardwick, Marius M. Haugland, Afaf H. El-Sagheer, Denis Ptchelkine, Tom Brown, Janet E. Lovett, Edward A. Anderson
      A Multi-Technique Approach to DNA Structure Determination
      33rd Molecular Modeling Workshop, Erlangen, Apr 08-10, 2019.
    • Frank R. Beierlein, Jack S. Hardwick, Marius M. Haugland, Afaf H. El-Sagheer, Denis Ptchelkine, Andrew N. Lane, Tom Brown, Janet E. Lovett, Edward A. Anderson
      Probing DNA Conformation: A Multi-Technique Approach
      34th Molecular Modeling Workshop, Erlangen, Feb 17-19, 2020.
    • NHR@FAU, Computer-Chemie-Centrum/AK Imhof
      DNA-Reparatur im Supercomputer
      Lange Nacht der Wissenschaften, Erlangen, May 21, 2022
    • Frank Beierlein, Senta Volkenandt, Petra Imhof
      DNA-Repair Mechanisms: Molecular Simulations and Computational Alchemy
      35th Molecular Modeling Workshop, Erlangen, Mar 13-15, 2023.
    • Jorge Antonio Amador-Balderas, Frank Beierlein Senta Volkenandt, Petra Imhof
      Effect of N140D and T197A mutations on DNA repair enzyme Thymine DNA Glycosylase
      35th Molecular Modeling Workshop, Erlangen, Mar 13-15, 2023.
    • Frank Beierlein, Senta Volkenandt, Petra Imhof
      DNA-Repair Mechanisms: Molecular Simulations and Computational Alchemy
      Hybrid Workshop on Computer Simulation and Theory of Macromolecules, Hünfeld, April 28-29, 2023.
    • Frank Beierlein, Senta Volkenandt, Petra Imhof
      DNA-Repair Mechanisms: Molecular Simulations and Computational Alchemy
      NHR Conference ’23, Berlin, Sept 18-20, 2023.
    • NHR@FAU, Computer-Chemie-Centrum/AK Imhof
      DNA-Reparatur im Supercomputer
      Lange Nacht der Wissenschaften, Erlangen, Oct 21, 2023.
    • Jorge Antonio Amador Balderas, Frank Beierlein, Petra Imhof
      Insight into the active site conformation of DNA repair Enzyme MBD4 from molecular
      simulations
      36th Molecular Modeling Workshop, Erlangen, Mar 4-6, 2024.
    • Frank Beierlein, Anselm H. C. Horn, Heinrich Sticht, Andriy Mokhir, Petra Imhof
      In Silico Study of Binding of Camptothecin-Based Pro-Drugs to Human Carboxylesterase 2
      36th Molecular Modeling Workshop, Erlangen, Mar 4-6, 2024.
    • Frank R. Beierlein, Jack S. Hardwick, Marius M. Haugland, Afaf H. El-Sagheer, Denis Ptchelkine, Andrew N. Lane, Tom Brown, Janet E. Lovett, Edward A. Anderson
      Probing DNA Conformation: A Multi-Technique Approach
      37th Molecular Modeling Workshop, Erlangen, Mar 31-Apr 2, 2025.
    • Jorge Antonio Amador Balderas, Frank Beierlein, Anselm H. C. Horn, Senta Volkenandt, Leon Völcker, Nikoo Mokhtari, Jules Cesar Epee Ndongue, Petra Imhof
      Mode of Metal Ligation Governs Inhibition of Carboxypeptidase A
      37th Molecular Modeling Workshop, Erlangen, Mar 31-Apr 2, 2025.
    Friedrich Alexander University Erlangen-Nürnberg
    Department of Chemistry and Pharmacy

    Nikolaus-Fiebiger-Str. 10
    91058 Erlangen
    Germany
    • Imprint
    • Privacy
    • Accessibility
    • RSS Feed
    • Instagram
    Up